Package: dsBaseClient 6.3.6.9000

dsBaseClient: 'DataSHIELD' Client Side Base Functions

Base 'DataSHIELD' functions for the client side. 'DataSHIELD' is a software package which allows you to do non-disclosive federated analysis on sensitive data. 'DataSHIELD' analytic functions have been designed to only share non disclosive summary statistics, with built in automated output checking based on statistical disclosure control. With data sites setting the threshold values for the automated output checks. For more details, see citation('dsBaseClient').

Authors:Paul Burton [aut], Rebecca Wilson [aut], Olly Butters [aut], Patricia Ryser-Welch [aut], Alex Westerberg [aut], Leire Abarrategui [aut], Roberto Villegas-Diaz [aut], Demetris Avraam [aut], Yannick Marcon [aut], Tom Bishop [aut], Amadou Gaye [aut], Xavier Escribà-Montagut [aut], Stuart Wheater [aut, cre]

dsBaseClient_6.3.6.9000.tar.gz
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dsBaseClient_6.3.6.9000.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
dsBaseClient/json (API)

# Install 'dsBaseClient' in R:

install.packages('dsBaseClient', repos = c('https://stuartwheater.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/stuartwheater/dsbaseclient/issues

On CRAN:

7.15 score 1 packages 259 scripts 892 downloads 119 exports 68 dependencies

Last updated from:eca9ae8905. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	172
source / vignettes	OK	264
linux-release-x86_64	OK	160
macos-release-arm64	OK	126
macos-oldrel-arm64	OK	105
windows-devel	OK	158
windows-release	OK	139
windows-oldrel	OK	137
wasm-release	OK	143

Exports:ds.abs ds.asCharacter ds.asDataMatrix ds.asFactor ds.asFactorSimple ds.asInteger ds.asList ds.asLogical ds.asMatrix ds.asNumeric ds.assign ds.auc ds.Boole ds.boxPlot ds.bp_standards ds.c ds.cbind ds.changeRefGroup ds.class ds.colnames ds.completeCases ds.contourPlot ds.cor ds.corTest ds.cov ds.dataFrame ds.dataFrameFill ds.dataFrameSort ds.dataFrameSubset ds.densityGrid ds.dim ds.dmtC2S ds.elspline ds.exists ds.exp ds.forestplot ds.gamlss ds.getWGSR ds.glm ds.glmerSLMA ds.glmPredict ds.glmSLMA ds.glmSummary ds.heatmapPlot ds.hetcor ds.histogram ds.igb_standards ds.isNA ds.isValid ds.kurtosis ds.length ds.levels ds.lexis ds.list ds.listClientsideFunctions ds.listDisclosureSettings ds.listOpals ds.listServersideFunctions ds.lmerSLMA ds.log ds.look ds.ls ds.lspline ds.make ds.matrix ds.matrixDet ds.matrixDet.report ds.matrixDiag ds.matrixDimnames ds.matrixInvert ds.matrixMult ds.matrixTranspose ds.mdPattern ds.mean ds.meanByClass ds.meanSdGp ds.merge ds.message ds.metadata ds.mice ds.names ds.ns ds.numNA ds.qlspline ds.quantileMean ds.ranksSecure ds.rbind ds.rBinom ds.recodeLevels ds.recodeValues ds.rep ds.replaceNA ds.reShape ds.rm ds.rNorm ds.rowColCalc ds.rPois ds.rUnif ds.sample ds.scatterPlot ds.seq ds.setDefaultOpals ds.setSeed ds.skewness ds.sqrt ds.subset ds.subsetByClass ds.summary ds.table ds.table1D ds.table2D ds.tapply ds.tapply.assign ds.testObjExists ds.unique ds.unList ds.var ds.vectorCalc subsetHelper

Dependencies:bit bit64 boot cli clipr CompQuadForm cpp11 crayon data.table digest dotCall64 dplyr DSI farver fields generics ggplot2 glue gridExtra gtable hms isoband labeling lattice lifecycle lme4 magrittr maps MASS mathjaxr Matrix meta metabook metadat metafor minqa nlme nloptr numDeriv pbapply pillar pkgconfig prettyunits progress purrr R6 rbibutils RColorBrewer Rcpp RcppEigen Rdpack readr reformulas rlang S7 scales spam stringi stringr tibble tidyselect tzdb utf8 vctrs viridisLite vroom withr xml2

Help page	Topics
Computes the absolute values of a variable	ds.abs
Converts a server-side R object into a character class	ds.asCharacter
Converts a server-side R object into a matrix	ds.asDataMatrix
Converts a server-side numeric vector into a factor	ds.asFactor
Converts a numeric vector into a factor	ds.asFactorSimple
Converts a server-side R object into an integer class	ds.asInteger
Converts a server-side R object into a list	ds.asList
Converts a server-side R object into a logical class	ds.asLogical
Converts a server-side R object into a matrix	ds.asMatrix
Converts a server-side R object into a numeric class	ds.asNumeric
Assigns an R object to a name in the server-side	ds.assign
Calculates the Area under the curve (AUC)	ds.auc
Converts a server-side R object into Boolean indicators	ds.Boole
Draw boxplot	ds.boxPlot
Renders boxplot	ds.boxPlotGG
Take a data frame on the server side an arrange it to pass it to the boxplot function	ds.boxPlotGG_data_Treatment
Take a vector on the server side an arrange it to pass it to the boxplot function	ds.boxPlotGG_data_Treatment_numeric
Draw boxplot with information from a numeric vector	ds.boxPlotGG_numeric
Draw boxplot with information from a data frame	ds.boxPlotGG_table
Calculates Blood pressure z-scores	ds.bp_standards
Combines values into a vector or list in the server-side	ds.c
Combines R objects by columns in the server-side	ds.cbind
Changes the reference level of a factor in the server-side	ds.changeRefGroup
Class of the R object in the server-side	ds.class
Produces column names of the R object in the server-side	ds.colnames
Identifies complete cases in server-side R objects	ds.completeCases
Generates a contour plot	ds.contourPlot
Calculates the correlation of R objects in the server-side	ds.cor
Tests for correlation between paired samples in the server-side	ds.corTest
Calculates the covariance of R objects in the server-side	ds.cov
Generates a data frame object in the server-side	ds.dataFrame
Creates missing values columns in the server-side	ds.dataFrameFill
Sorts data frames in the server-side	ds.dataFrameSort
Sub-sets data frames in the server-side	ds.dataFrameSubset
Generates a density grid in the client-side	ds.densityGrid
Retrieves the dimension of a server-side R object	ds.dim
Copy a clientside data.frame, matrix or tibble to the serverside	ds.dmtC2S
Basis for a piecewise linear spline with meaningful coefficients	ds.elspline
Checks if an object is defined on the server-side	ds.exists
Computes the exponentials in the server-side	ds.exp
Secure ranking of a vector across all sources and use of these ranks to estimate global quantiles across all studies	ds.extractQuantiles
Forestplot for SLMA models	ds.forestplot
Generalized Additive Models for Location Scale and Shape	ds.gamlss
Computes the WHO Growth Reference z-scores of anthropometric data	ds.getWGSR
Fits Generalized Linear Model	ds.glm
Fits Generalized Linear Mixed-Effect Models via Study-Level Meta-Analysis	ds.glmerSLMA
Applies predict.glm() to a serverside glm object	ds.glmPredict
Fit a Generalized Linear Model (GLM) with pooling via Study Level Meta-Analysis (SLMA)	ds.glmSLMA
Summarize a glm object on the serverside	ds.glmSummary
Generates a Heat Map plot	ds.heatmapPlot
Heterogeneous Correlation Matrix	ds.hetcor
Generates a histogram plot	ds.histogram
Converts birth measurements to intergrowth z-scores/centiles	ds.igb_standards
Checks if a server-side vector is empty	ds.isNA
Checks if a server-side object is valid	ds.isValid
Calculates the kurtosis of a numeric variable	ds.kurtosis
Gets the length of an object in the server-side	ds.length
Produces levels attributes of a server-side factor	ds.levels
Represents follow-up in multiple states on multiple time scales	ds.lexis
Constructs a list of objects in the server-side	ds.list
Lists client-side functions	ds.listClientsideFunctions
Lists disclosure settings	ds.listDisclosureSettings
Lists server-side functions	ds.listServersideFunctions
Fits Linear Mixed-Effect model via Study-Level Meta-Analysis	ds.lmerSLMA
Computes logarithms in the server-side	ds.log
Performs direct call to a server-side aggregate function	ds.look
lists all objects on a server-side environment	ds.ls
Basis for a piecewise linear spline with meaningful coefficients	ds.lspline
Calculates a new object in the server-side	ds.make
Creates a matrix on the server-side	ds.matrix
Calculates de determinant of a matrix in the server-side	ds.matrixDet
Returns matrix determinant to the client-side	ds.matrixDet.report
Calculates matrix diagonals in the server-side	ds.matrixDiag
Specifies the dimnames of the server-side matrix	ds.matrixDimnames
Inverts a server-side square matrix	ds.matrixInvert
Calculates tow matrix multiplication in the server-side	ds.matrixMult
Transposes a server-side matrix	ds.matrixTranspose
Display missing data patterns with disclosure control	ds.mdPattern
Computes server-side vector statistical mean	ds.mean
Computes the mean and standard deviation across categories	ds.meanByClass
Computes the mean and standard deviation across groups defined by one factor	ds.meanSdGp
Merges two data frames in the server-side	ds.merge
Returns server-side messages to the client-side	ds.message
Gets the metadata associated with a variable held on the server	ds.metadata
Multivariate Imputation by Chained Equations	ds.mice
Return the names of a list object	ds.names
Generate a Basis Matrix for Natural Cubic Splines	ds.ns
Gets the number of missing values in a server-side vector	ds.numNA
Basis for a piecewise linear spline with meaningful coefficients	ds.qlspline
Computes the quantiles of a server-side variable	ds.quantileMean
Secure ranking of a vector across all sources	ds.ranksSecure
Combines R objects by rows in the server-side	ds.rbind
Generates Binomial distribution in the server-side	ds.rBinom
Recodes the levels of a server-side factor vector	ds.recodeLevels
Recodes server-side variable values	ds.recodeValues
Creates a repetitive sequence in the server-side	ds.rep
Replaces the missing values in a server-side vector	ds.replaceNA
Reshapes server-side grouped data	ds.reShape
Deletes server-side R objects	ds.rm
Generates Normal distribution in the server-side	ds.rNorm
Computes rows and columns sums and means in the server-side	ds.rowColCalc
Generates Poisson distribution in the server-side	ds.rPois
Generates Uniform distribution in the server-side	ds.rUnif
Performs random sampling and permuting of vectors, dataframes and matrices	ds.sample
Generates non-disclosive scatter plots	ds.scatterPlot
Generates a sequence in the server-side	ds.seq
Server-side random number generation	ds.setSeed
Calculates the skewness of a server-side numeric variable	ds.skewness
Computes the square root values of a variable	ds.sqrt
Generates a valid subset of a table or a vector	ds.subset
Generates valid subset(s) of a data frame or a factor	ds.subsetByClass
Generates the summary of a server-side object	ds.summary
Generates 1-, 2-, and 3-dimensional contingency tables with option of assigning to serverside only and producing chi-squared statistics	ds.table
Generates 1-dimensional contingency tables	ds.table1D
Generates 2-dimensional contingency tables	ds.table2D
Applies a Function Over a Server-Side Ragged Array	ds.tapply
Applies a Function Over a Ragged Array on the server-side	ds.tapply.assign
Checks if an R object exists on the server-side	ds.testObjExists
Perform 'unique' on a variable on the server-side	ds.unique
Flattens Server-Side Lists	ds.unList
Computes server-side vector variance	ds.var
Performs a mathematical operation on two or more vectors	ds.vectorCalc

Package: dsBaseClient 6.3.6.9000

dsBaseClient: 'DataSHIELD' Client Side Base Functions

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